APS Type 1

As I write this I am hoping you can help me or guide me in the right direction. For the past 10 years I have had complaints that no doctor can find a result to all of my symptoms. I have been diagnosed with Hashimotos disease (Hypothyroid) and high blood pressure. Every day I have extreme fatigue. I have a strange pinching pain that I feel in my feet daily. My bones hurt me daily and i feel like i have "queasy bones" if that makes any sense. I have severe twitching all over my body (like muscle/nerve twitches) in my face, forearms, calves and hands. I get numbness and tingling in my hands as well. I do suffer severe confusion sometimes that i like to call my brain fog days. Docs have told me that it is probably from hypothyroid, yet my levels with the meds I currently take say they are ok. What i do know is certain things docs have told me of my labs, yet I only seem to have hypothyroid and hbp. Low calcium levels (here all the time), high protein in urine, have calcification spots on bones?, elevated PTH levels, and severely low vitamin D levels. I have also been told I have elevated liver enzymes. I have been tested for hepatitus, MS, diabetes, etc...and all are negative. I take 50,000 IU of Vitamin D prescribed by doc and calcium w/vitamin d over the counter. Nothing seems to be helping??? Do you think i could have a hypoparathyroid problem? Please help.....any answers are greatly appreciated.